Faster Smith-Waterman database searches with inter-sequence SIMD parallelisation
نویسندگان
چکیده
منابع مشابه
Striped Smith-Waterman speeds database searches six times over other SIMD implementations
MOTIVATION The only algorithm guaranteed to find the optimal local alignment is the Smith-Waterman. It is also one of the slowest due to the number of computations required for the search. To speed up the algorithm, Single-Instruction Multiple-Data (SIMD) instructions have been used to parallelize the algorithm at the instruction level. RESULTS A faster implementation of the Smith-Waterman al...
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ژورنال
عنوان ژورنال: BMC Bioinformatics
سال: 2011
ISSN: 1471-2105
DOI: 10.1186/1471-2105-12-221